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Call2plink sub-workflow #41

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Call2plink sub-workflow #41

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Mxrcon
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@Mxrcon Mxrcon commented Oct 29, 2022

Hey, There 👋

This PR aims to provide a basework for the call2plink sub-workflow

🚧 WIP 🚧

@Mxrcon Mxrcon changed the title base work on modules Call2plink sub-workflow Nov 22, 2022
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@abhi18av abhi18av left a comment

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Added general suggestions - will review again when its a bit more complete.

process bedify {

input:
set file(ped), file(map)
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Suggested change
set file(ped), file(map)
tuple file(ped), file(map)

Comment on lines +8 to +10
def samplesize = params.samplesize
def idpat = params.idpat
def output = report.baseName
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Suggested change
def samplesize = params.samplesize
def idpat = params.idpat
def output = report.baseName
def samplesize = params.samplesize
def idpat = params.idpat
def output = report.baseName

def output = report.baseName
"""
hostname
topbottom.py $array $report $samplesize '$idpat' $output
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Davi, we'd also need to add this script to the bin

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2 participants